Mickey: strange issue.. HDD activity stuck at 100% with high response time randomly, unless...

I'm facing a weird issue... my hard drive active time gets stuck at 100% for a while and I/O speed drops from MB to KB making my pc slow.. this problem goes away if i ran any type of scan.. at this time I/O speed remains at MB, high response time process goes away and pc runs fine.. what could be the problem?

things i've tried:

1- scanned my pc with anti-virus and anti-maleware
2- run a CHKSDK for bad sectors
3- re-installed my GPU driver with a new one
4-used CCleaner to remove pc trashes...

strange issue.. HDD activity stuck at 100% with high response time randomly, unless I'm running a scan

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